Gene | NCC Oncopanel (ver 2) | Thermo Fisher Oncomine Dx Test | Personails ACE CancerPlus™ Test | Illumina Trusight Tumor 26 | Ion AmpliSeq Cancer Hotspot Panel v2 | No of mutations in COSMIC | COSMIC_ID | CDS Mutation | FATHMM | gRNA sequense | (No of mismatch) | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Distanse from PAM | 0 | 1 | 2 | 3 | ||||||||||||
AKT1 | * | * | * | * | * | 975 | COSM33765 | 49G > A | Pathogenic | (score 1.00) | CACCACCCGCACGTCTGTAGGGG | 1 | 1 | 1 | 1 | 12 |
AKT3 | * | * | 269 | COSM242892 | 232C > A | Pathogenic (score 0.99) | TCTCTATAACAGTAGTCCACTGG | 1 | 1 | 0 | 0 | 27 | ||||
ALK | * | * | * | * | * | 1522 | COSM28056 | 3824G > A | Pathogenic | (score 0.98) | TACTCACCTGTAGATGTCTCGGG | 4 | 1 | 1 | 1 | 16 |
BAP1 | * | * | 1221 | COSM110721 | 178C > T | Pathogenic | (score 0.98) | CCAAGGTAGAGACCTTTCGCCGG | 5 | 1 | 1 | 1 | 9 | |||
BCL2L11(BIM) | * | * | 116 | COSM389356 | 585G > C | Pathogenic (score 0.98) | GTTACATTGTCCGCCTGGTGTGG | 1 | 1 | 0 | 0 | 7 | ||||
BRAF | * | * | *> | * | * | 27,630 | COSM476 | 1799 T > A | Pathogenic (score 0.99) | TAGCTACAGTGAAATCTCGATGG | 12 | 1 | 0 | 1 | 20 | |
BRAF’ | * | * | * | * | * | 4 | COSM1137 | 1817G > A | Pathogenic (score 0.98) | ACAGTGAAATCTCGATGGAGTGG | 1 | 1 | 1 | 0 | 25 | |
CDK4 | * | * | * | 101 | COSM1677139 | 70C > T | Pathogenic | (score 0.98) | AGTGGCCACTGTGGGGATCACGG | 2 | 1 | 1 | 2 | 45 | ||
CDKN2A(p16) | * | * | * | * | 5911 | COSM12475 | 238C > T | Pathogenic | (score 0.88) | GGGCAGCGTCGTGCACGGGTCGG | 2 | 1 | 1 | 1 | 4 | |
CTNNB1(β-catenin) | * | * | * | * | * | 7307 | COSM5664 | 121A > G | Pathogenic | (score 0.98) | CAGAGAAGGAGCTGTGGTAGTGG | 6 | 1 | 1 | 11 | 195 |
DNMT3A | * | * | 3679 | COSM52944 | 2645G > A | Pathogenic | (score 0.98) | CGTCTCCAACATGAGCCGCTTGG | 6 | 1 | 1 | 2 | 18 | |||
ERBB2(HER2) | * | * | * | * | * | 1596 | COSM48358 | 929C > T | Pathogenic | (score 0.97) | CAGGGGGCAGACGAGGGTGCAGG | 1 | 1 | 1 | 21 | 201 |
ERBB3 | * | * | * | 900 | COSM20710 | 310G > A | Pathogenic | (score 0.88) | ACCATTGCCCAACCTCCGCGTGG | 4 | 1 | 1 | 1 | 7 | ||
EZH2 | * | * | * | * | 1273 | COSM37028 | 1937A > T | Pathogenic | (score 0.99) | GAATTCATCTCAGAATACTGTGG | 7 | 1 | 1 | 5 | 77 | |
FBXW7 | * | * | * | * | 1972 | COSM22975 | 1513C > T | Pathogenic | (score 0.94) | TGCCATCATATTGAACACAGCGG | 2 | 1 | 1 | 1 | 18 | |
FGFR3 | * | * | * | * | 4354 | COSM715 | 746C > G | Pathogenic | (score 0.96) | CTGCAGGATGGGCCGGTGCGGGG | 1 | 2 | 4 | 7 | 58 | |
FOXL2 | * | * | 933 | COSM33661 | 402C > G | Pathogenic | (score 0.95) | CTTCTCGAACATGTCTTCGCAGG | 5 | 1 | 1 | 1 | 12 | |||
HRAS | * | * | * | * | 2023 | COSM502 | 183G > T | none | (score 0.53) | CATCCTGGATACCGCCGGCCAGG | 2 | 2 | 2 | 2 | 16 | |
IDH2 | * | * | * | * | 2430 | COSM33733 | 515G > A | Pathogenic | (score 0.99) | CCAAGCCCATCACCATTGGCAGG | 2 | 1 | 1 | 4 | 86 | |
IGF2 | * | 132 | COSM1561457 | 293C > T | Pathogenic (score 0.97) | ACCCTCACCGGAAGCACGGTCGG | 2 | 1 | 0 | 0 | 1 | |||||
JAK2 | * | * | * | * | 50,556 | COSM12600 | 1849G > T | Pathogenic | (score 0.94) | AATTATGGAGTATGTGTCTGTGG | 8 | 1 | 1 | 1 | 75 | |
KIT | * | * | * | * | * | 8856 | COSM1314 | 2447A > T | Pathogenic | (score 0.99) | AGAATCATTCTTGATGTCTCTGG | 7 | 1 | 1 | 1 | 133 |
KNSTRN | * | 118 | COSM140056 | 71C > T | Neutral | (score 0.00) | GTAGCTAGGCGGAAGTGGGTGGG | 1 | 1 | 1 | 2 | 28 | ||||
KRAS | * | * | * | * | * | 43,548 | No ID | 124G > A | – | CTTGTGGTAGTTGGAGCTGGTGG | 4 | 1 | 1 | 1 | 46 | |
MAGOH | * | 43 | COSM535605 | 410 T > C | Pathogenic | (score 0.99) | TGTTTGGTCTTCAGTCTTATTGG | 4 | 1 | 2 | 3 | 76 | ||||
MAP 2 K1 | * | * | * | * | 496 | COSM235614 | 370C > T | Pathogenic | (score 0.99) | CCATAGAAGCCCACGATGTACGG | 1 | 1 | 4 | 4 | 10 | |
MAPK1 | * | * | 173 | COSM461148 | 964G > A | Pathogenic | (score 0.98) | GTATTACGACCCGAGTGACGAGG | 4 | 1 | 1 | 1 | 2 | |||
MDM2 | * | * | 110 | COSM431747 | 994C > T | Pathogenic | (score 0.91) | AGGAAGCCAATTCTCACGAAGGG | 6 | 1 | 1 | 2 | 25 | |||
MET | * | * | * | * | * | 1142 | COSM707 | 3029C > T | Pathogenic | (score 0.98) | TTTGAAACCATTTCTGTAGTTGG | 5 | 1 | 1 | 2 | 78 |
MTOR | * | * | * | 1195 | COSM20417 | 6644C > A | Pathogenic | (score 1.00) | CCAATGACCCAACATCTCTTCGG | 8 | 1 | 1 | 1 | 12 | ||
MYCN | * | 305 | COSM35624 | 131C > T | Pathogenic (score 0.96) | CTTCCAGATGTCCTCCCCCGGGG | 1 | 1 | 0 | 0 | 24 | |||||
NOTCH1 | * | * | * | * | 3921 | COSM12771 | 4799 T > C | Pathogenic | (score 0.99) | CCACGTTGGTGTGCAGCACGCGG | 9 | 1 | 1 | 1 | 53 | |
NRAS | * | * | * | * | * | 6676 | COSM5930625 | 112G > A | Pathogenic | (score 0.99) | AAACTGGTGGTGGTTGGAGCAGG | 1 | 1 | 1 | 1 | 67 |
PDGFRA | * | * | * | * | * | 2354 | COSM736 | 2525A > T | Pathogenic | (score 0.99) | CGAATCATGCATGATGTCTCTGG | 7 | 1 | 1 | 1 | 24 |
PIK3CA | * | * | * | * | * | 13,613 | COSM775 | 3140A > G | Pathogenic | (score 0.96) | ATGAATGATGCACATCATGGTGG | 1 | 1 | 0 | 1 | 56 |
PTCH1 | * | * | * | 1331 | COSM1638394 | 3944C > T | Pathogenic | (score 1.00) | AGCGTCTCTGCGCGGTCTGTAGG | 1 | 1 | 1 | 1 | 7 | ||
PTEN | * | * | * | * | * | 4778 | No ID | 697C > T | – | AACTTGTCTTCCCGTCGTGTGGG | 7 | 1 | 0 | 1 | 7 | |
SMO | * | * | * | * | 593 | COSM216037 | 1234C > T | Pathogenic | (score 0.96) | AGCCTCCCACGATGAGCACCAGG | 8 | 1 | 1 | 1 | 102 | |
STAT3 | * | * | 805 | COSM1155743 | 1919A > T | Pathogenic | (score 0.97) | TTCAGCTGCTGCTTTGTGTATGG | 5 | 1 | 1 | 6 | 92 | |||
TP53(p53) | * | * | * | * | * | 39,196 | COSM10662 | 743G > A | Pathogenic | (score 0.98) | GCATGGGCGGCATGAACCGGAGG | 5 | 1 | 0 | 0 | 3 |