SNP | Chromosome | Functional Consequence | Annealing temp. | Alleles | Restriction enzymes | Primer sequences |
---|---|---|---|---|---|---|
FokI rs2228570 | 12:47,879,112 | Missense | 72.5 °C | C > T | FokI | F: GCACTGACTCTGGCTCTGAC R: ACCCTCCTGCTCCTGTGGCT |
ApaI rs7975232 | 12:47,845,054 | Intron variant | 66.0 °C | C > A | ApaI | F: CAGAGCATGGACAGGGAGCAA R: GCAACTCCTCATGGCTGAGGTCTC |
TaqI rs731236 | 12:47,844,974 | Coding sequence variant, synonymous variant | 51.9 °C | T > C | TaqI | F:5’- CCTGTGCCTTCTTCTCTAT − 3’ R: 5’- CTAGCTTCTGGATCATCTTG- 3’ |
BsmI rs1544410 | 12:47,846,052 | Intron variant | 50.5 °C | G > A | BsmFI | F: 5’- ATATAGGCAGAACCATCTCT − 3’ R: 5’- TCTGAGGAACTAGATAAGCA − 3’ |