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Table 4 RNA interaction analysis of NEAT1

From: NEAT1 can be a diagnostic biomarker in the breast cancer and gastric cancer patients by targeting XIST, hsa-miR-612, and MTRNR2L8: integrated RNA targetome interaction and experimental expression analysis

Gene Name

Pair Gene Name

Pair Gene Type

n

Free Energy

Score (Smith-Waterman)

NEAT1

MTRNR2L8

protein_coding

13

-25.4

30

NEAT1

ACTG1

protein_coding

5

-32.2

21.5

NEAT1

ZNF354B

protein_coding

5

-12.9

19

NEAT1

WDR74

protein_coding

4

-21.5

24

NEAT1

TMSB4X

protein_coding

3

-35.3

31

NEAT1

ACTB

protein_coding

3

-35.1

23.5

NEAT1

RPL13

protein_coding

3

-26.6

20.5

NEAT1

RPL27A

protein_coding

3

-24.4

18

NEAT1

DKC1

protein_coding

3

-22.8

19

NEAT1

PPRC1

protein_coding

3

-19.8

15.5

NEAT1

PCDH7

protein_coding

3

-15.5

24

NEAT1

KMT2D

protein_coding

3

-14.5

16

NEAT1

KMT2B

protein_coding

3

-14.1

13.5

NEAT1

CCDC66

protein_coding

3

-11.5

11.5

NEAT1

XIST

lincRNA

9

-19.8

19.5

NEAT1

MALAT1

lincRNA

5

-24.9

20.5

nNEAT1

AP001496.2

lincRNA

2

-24.8

17

NEAT1

MIRLET7BHG

lincRNA

1

-14

14

NEAT1

LINC01521

lincRNA

1

-10.8

14

NEAT1

FTX

lincRNA

1

-11

17.5

NEAT1

LINC00665

lincRNA

1

-11.1

14

NEAT1

LINC01748

lincRNA

1

-8.1

19.5

NEAT1

MUC20-OT1

lincRNA

1

-11.6

16

NEAT1

RP11-731F5.1

lincRNA

1

-34.9

28

NEAT1

LINC02392

lincRNA

1

-22.4

28

NEAT1

AL356488.2

lincRNA

1

-11.2

13

NEAT1

AP000350.6

lincRNA

1

-9.2

10

NEAT1

AC245014.3

lincRNA

1

-12.7

16

NEAT1

AL161756.3

lincRNA

1

-22.2

12.5

NEAT1

RMRP

lincRNA

1

-9.7

17

NEAT1

hsa-miR-612

miRNA

11

-18.3

26

NEAT1

hsa-miR-664b-5p

miRNA

3

-22.8

19

NEAT1

AC079949.1

miRNA

2

-24.8

13

NEAT1

AL161626.1

miRNA

1

-6.5

10

NEAT1

AL121992.1

miRNA

1

-16.5

17

NEAT1

hsa-miR-6087

miRNA

1

-29.4

23