Skip to main content

Table 4 RNA interaction analysis of NEAT1

From: NEAT1 can be a diagnostic biomarker in the breast cancer and gastric cancer patients by targeting XIST, hsa-miR-612, and MTRNR2L8: integrated RNA targetome interaction and experimental expression analysis

Gene Name Pair Gene Name Pair Gene Type n Free Energy Score (Smith-Waterman)
NEAT1 MTRNR2L8 protein_coding 13 -25.4 30
NEAT1 ACTG1 protein_coding 5 -32.2 21.5
NEAT1 ZNF354B protein_coding 5 -12.9 19
NEAT1 WDR74 protein_coding 4 -21.5 24
NEAT1 TMSB4X protein_coding 3 -35.3 31
NEAT1 ACTB protein_coding 3 -35.1 23.5
NEAT1 RPL13 protein_coding 3 -26.6 20.5
NEAT1 RPL27A protein_coding 3 -24.4 18
NEAT1 DKC1 protein_coding 3 -22.8 19
NEAT1 PPRC1 protein_coding 3 -19.8 15.5
NEAT1 PCDH7 protein_coding 3 -15.5 24
NEAT1 KMT2D protein_coding 3 -14.5 16
NEAT1 KMT2B protein_coding 3 -14.1 13.5
NEAT1 CCDC66 protein_coding 3 -11.5 11.5
NEAT1 XIST lincRNA 9 -19.8 19.5
NEAT1 MALAT1 lincRNA 5 -24.9 20.5
nNEAT1 AP001496.2 lincRNA 2 -24.8 17
NEAT1 MIRLET7BHG lincRNA 1 -14 14
NEAT1 LINC01521 lincRNA 1 -10.8 14
NEAT1 FTX lincRNA 1 -11 17.5
NEAT1 LINC00665 lincRNA 1 -11.1 14
NEAT1 LINC01748 lincRNA 1 -8.1 19.5
NEAT1 MUC20-OT1 lincRNA 1 -11.6 16
NEAT1 RP11-731F5.1 lincRNA 1 -34.9 28
NEAT1 LINC02392 lincRNA 1 -22.4 28
NEAT1 AL356488.2 lincRNA 1 -11.2 13
NEAT1 AP000350.6 lincRNA 1 -9.2 10
NEAT1 AC245014.3 lincRNA 1 -12.7 16
NEAT1 AL161756.3 lincRNA 1 -22.2 12.5
NEAT1 RMRP lincRNA 1 -9.7 17
NEAT1 hsa-miR-612 miRNA 11 -18.3 26
NEAT1 hsa-miR-664b-5p miRNA 3 -22.8 19
NEAT1 AC079949.1 miRNA 2 -24.8 13
NEAT1 AL161626.1 miRNA 1 -6.5 10
NEAT1 AL121992.1 miRNA 1 -16.5 17
NEAT1 hsa-miR-6087 miRNA 1 -29.4 23