Table 2 The list of top 10 up-regulated and 10 down-regulated genes in B. indicus (Hariana) and its cross-breed of B. taurus (Vrindavani) cattle
Genes | log2FoldChange | padj(FDR) |
|---|---|---|
TOP 10 Up-regulated genes in Hariana breed | ||
 HSPB1 | 3.97 | 1.34E-49 |
 SLC5A3 | 3.49 | 1.70E-08 |
 HSPA1A | 3.14 | 8.04E-11 |
 FKBP4 | 2.84 | 5.49E-17 |
 LOC781339 | 2.70 | 7.91E-17 |
 HSP90AA1 | 2.70 | 7.41E-25 |
 HSPA6 | 2.56 | 5.91E-05 |
 HSPA4 | 2.46 | 1.57E-17 |
 ACOT7 | 2.37 | 3.94E-09 |
 HSPH1 | 2.23 | 3.02E-05 |
TOP 10 Down-regulated genes in Hariana breed | ||
 NOS2 | -5.12 | 1.77E-12 |
 MMP19 | -4.25 | 8.91E-06 |
 IL1RN | -3.62 | 9.58E-14 |
 SDS | -3.52 | 6.39E-09 |
 IL6 | -2.88 | 2.24E-08 |
 EDN1 | -2.69 | 9.91E-10 |
 ITGAX | -2.63 | 4.66E-06 |
 CYP3A4 | -2.44 | 1.98E-06 |
 FLT1 | -2.39 | 1.20E-05 |
 TPI1 | -2.37 | 2.67E-05 |
TOP 10 Up-regulated genes in Vrindavani breed | ||
 BAG3 | 5.65 | 0.000188988 |
 FKBP4 | 5.53 | 7.86E-15 |
 ZFAND2A | 5.51 | 1.03E-12 |
 SLC5A3 | 5.35 | 7.86E-15 |
 HSPB1 | 5.24 | 3.26E-22 |
 DNAJA4 | 4.96 | 1.70E-10 |
 HSP90AA1 | 4.40 | 8.37E-16 |
 LOC112442850 | 4.11 | 3.32E-05 |
 CLU | 3.86 | 1.98E-07 |
 BAG2 | 3.79 | 1.89E-08 |
TOP 10 Down-regulated genes in Vrindavani breed | ||
 RBM3 | -2.94 | 2.88E-20 |
 BOLA-DRA | -2.62 | 8.63E-09 |
 BOLA-DQA5 | -2.45 | 5.24E-05 |
 HCST | -2.39 | 4.89E-07 |
 SVBP | -2.36 | 7.74E-05 |
 BOLA-DQA2 | -2.30 | 4.11E-05 |
 IDO1 | -2.29 | 0.000125643 |
 HOPX | -2.19 | 1.32E-07 |
 BOLA-DOA | -2.18 | 4.11E-05 |
 LOC100848815 | -2.12 | 6.72E-07 |