From: Polymorphism in autophagy-related genes LRP1 and CAPZA1 may promote gastric mucosal atrophy
Gene | SNP | Major > Minor |  | Sequence of primer pairs (5' to 3’) | Annealing temperature(℃) | Cycle numbers |
---|---|---|---|---|---|---|
LRP1 | rs715948 | T > C | Forward | TCCCTTTCCAGCCCTAAAAT | 64.0 | 50 |
Reverse | GCCCCCAGTAAGTGGTGTAA | |||||
rs1799986 | C > T | Forward | CACCATAGCCAGCTTGTTCA | 62.5 | 50 | |
Reverse | CGGAAGGTGGGCTGATAATA | |||||
rs1800137 | C > T | Forward | AAGCTCGTCGACAGCAAGAT | 63.5 | 50 | |
Reverse | GTTCCCCTACAGAGGCTTCC | |||||
rs1800159 | G > A | Forward | GCTAGCCAGGTGAGGCTGT | 66.0 | 50 | |
Reverse | GGTGTGGAGGTGTCTGTGTG | |||||
rs11172113 | T > C | Forward | ACTCAGAATGGAAGCGGAGA | 61.0 | 50 | |
Reverse | AGAGCCTGCAGGAATCTGAA | |||||
rs11837145 | C > A | Forward | CACAGGTCCCATCCAAGTG | 62.5 | 50 | |
Reverse | CTCCAGGCCATTCAAAGGTA | |||||
CAPZA1 | rs4423118 | G > A | Forward | GATCAGAAAGGCAGCGACTC | 62.0 | 50 |
Reverse | CTGCAAGTTTTACCCCAAGG | |||||
rs4525162 | C > T | Forward | CTCCCCTGGGAGGTCATTAT | 62.5 | 50 | |
Reverse | ACCTCTGTTGGGTGAAGTGG | |||||
rs10885188 | G > A | Forward | GTGTTGCTTCTATGTGCCTTTG | 62.0 | 50 | |
Reverse | AACAGCCTTCTGCAGCAAAT | |||||
rs58618380 | T > A | Forward | AAGCTCTGTTTGGAGGCAAG | 61.0 | 50 | |
Reverse | GAGCTTCCTTTGCCAGTTTG | |||||
rs71481135 | T > C | Forward | GGAGTGCAATGTCTGCTGAG | 62.5 | 50 | |
Reverse | CCTCACCCATGATAGGCAGT | |||||
LAMP1 | rs9577230 | T > C | Forward | TGCAAGTTCTAGCCGGTTTT | 61.0 | 50 |
Reverse | AGGGTCTGCAACACACACAG | |||||
rs9577502 | A > T | Forward | GACATGCAATGCAAACACTG | 62.0 | 50 | |
Reverse | TTTGGAGATGGTCTCGCTCT | |||||
rs12871648 | A > C | Forward | AGCCAGGCTTTTGGGTTTAT | 65.6 | 50 | |
Reverse | CAAATTGGGTGGGAGATGAG |