Table 1 Comparison of similarity between each protein

Protein name 1

MutM(148-212)

MutM (148-212)

Nei(145-212)

MutM(1-137)

MutM(1-137)

Nei(1-126)

Protein name 2

Nei

(145-212)

KsgA

(214-273)

KsgA

(214-273)

Nei

(1-126)

KsgA

(1-213)

KsgA

(1-213)

# of pruned atom pairs

(RMSD)

44

(0.927 Å)

25

(1.067 Å)

21

(1.188 Å)

55

(1.119 Å)

–

5

(1.385 Å)

# of all pairs

(RMSD)

59

(2.493 Å)

54

(6.644 Å)

55

(7.477 Å)

119

(3.088 Å)

Fewer than 3

92

(15.770 Å)

Percentage of pruned atom pairs in all pairs

75%

46%

38%

46%

–

5%