Genome-wide expression analysis reveals different heat shock responses in indigenous (Bos indicus) and crossbred (Bos indicus X Bos taurus) cattle

Table 1 Overview of sequence data for control and heat stress group samples for Hariana and Vrindavani cattle and results of alignment to annotated reference of cattle genome

Sample id	Sample Name	Total reads	Total mapped reads	Unmapped reads	Mapping (%)	genes with read counts	Transcriptome (%)
H1CN	Hariana control1	237916210	235786737	2129473	99.11	18271	83.50
H2CN	Hariana control2	224288520	222119147	2169373	99.03	18144	82.92
H3CN	Hariana control3	239439060	236752849	2686211	98.88	18495	84.52
H1HS	Hariana heat stress1	229920202	227622020	2298182	99.00	18583	84.93
H2HS	Hariana heat stress2	239595592	237360061	2235531	99.06	18537	84.72
H3HS	Hariana heat stress3	216899590	214573568	2326022	98.93	18440	84.27
V1CN	Vrindavani control1	217530560	215501957	2028603	99.07	17932	81.95
V2CN	Vrindavani control2	216324790	213623203	2701587	98.75	18282	83.55
V3CN	Vrindavani control3	223854906	221561138	2293768	98.98	18196	83.16
V1HS	Vrindavani heat stress1	222051964	219925107	2126857	99.05	18605	85.03
V2HS	Vrindavani heat stress2	242652446	239450639	3201807	98.68	19627	89.70
V3HS	Vrindavani heat stress3	256578848	254061408	2517440	99.02	18812	85.97

ISSN: 1880-7062