The strains recommended for use in the bacterial reverse mutation test (OECD guideline 471) can be certified as non-genetically modified organisms
Genes and Environment volume 38, Article number: 2 (2016)
The bacterial reverse mutation test, commonly called Ames test, is used worldwide. In Japan, the genetically modified organisms (GMOs) are regulated under the Cartagena Domestic Law, and organisms obtained by self-cloning and/or natural occurrence would be exempted from the law case by case. The strains of Salmonella typhimurium and Escherichia coli recommended for use in the bacterial reverse mutation test (OECD guideline 471), have been considered as non-GMOs because they can be constructed by self-cloning or naturally occurring bacterial strains, or do not disturb the biological diversity. The present article explains the reasons why these tester strains should be classified as non-GMOs.
Definition of genetically modified organisms
Genetically modified organisms (GMOs) are defined as an organism “in which the genetic material (DNA) has been altered in a way that does not occur naturally by mating and/or natural recombination, without using modern recombinant DNA technology” . Accordingly, organisms are considered to be a non-GMO if they are made by the transfer of genetic material through bacterial conjugation between same/different species. For example, the transfer of the antibiotic resistance genes naturally occurs by bacterial conjugation in a broad host range . It is also known that bacteria gain the property of antibiotic resistance through the genetic mutations and horizontal transfer of the antibiotic resistance genes under selective pressures . Therefore, non-GMOs are not considered to disturb the biological diversity.
Gene mutations of the Ames tester strains recommended in OECD guideline 471
The strains which are used in the bacterial reverse mutation test (OECD guideline 471)  are derivatives of S. enterica serovar Typhimurium (S. typhimurium) LT2 or E. coli B strain [5–7]. All the Ames tester strains recommended for use in the bacterial reverse mutation test are listed in Table 1. The Salmonella tester strains harbor different mutations (hisD3052, hisG46, hisC3076, hisG428, hisD6610 and hisO1242) in the genes of the histidine operon of S. typhimurium. The Salmonella strains originated from S. typhimurium LT2 are histidine auxotrophs which are the result from treatment with mutagens or radiation [5, 6, 8–13]. In addition, the all Salmonella tester strains carry an rfa (deep rough) mutation for permeation of test chemicals, and the strains except for TA102 have a deletion mutation of uvrB gene to keep adducts generated with test chemicals as well as gal, chl, and bio genes [5, 6, 14]. The two tester strains of E. coli carry a terminating ochre mutation in the trpE gene as well as a uvrA mutation [15, 16]. Thus, the genetic background changes (mutations) in the Ames tester strains can naturally occur without using modern recombinant DNA technology.
pKM101 plasmid can naturally occur and self-transmissible
As shown in Table 1, the five strains of S. typhimurium (TA98, TA100, TA102, TA97 and TA97a) and one strain of E. coli (WP2uvrA/pKM101) harbor plasmid pKM101. Plasmid pKM101 carries an ampicillin resistance gene and mucAB genes encoding analogs of UmuD/C proteins of E. coli, which are involved in error-prone DNA repair [6, 17]. pKM101 (35.4 kb) is derived from its clinically isolated parent R46 plasmid by an in vivo 14-kb deletion . R46 plasmid contains four drug-resistance genes, while pKM101 dose not contain the other three drug-resistance genes with the exception of the ampicillin resistance gene [19, 20]. In addition, since R plasmids have a self-transmissible nature, pKM101 is normally present in the members of the family Enterobacteriaceae including the genera Salmonella and Escherichia [6, 17]. Taken together, plasmid pKM101 is considered to be a derivative of a naturally occurring plasmid, and self-transmittable.
pAQ1 plasmid in the Ames tester strains does not disturb the biological diversity
The S. typhimurium TA102 strain harbors plasmids pAQ1 in addition to pKM101. The pAQ1 is a derivative of pBR322 and carries the target DNA sequence for reversion, hisG428, a part of the histidine biosynthetic operon originated from S. typhimurium. Thus, hisG428 is a self-cloned gene. The vector pBR322 consists of the following DNA segments assembled in vitro; the tetracycline resistance gene, ampicillin resistance gene, and the replicator regions derived from colicin plasmid, pMB1 [21, 22]. The two drug resistance genes are derived from transposons, Tn10 and Tn3, respectively [22, 23]. Transposons are known to be transferred between related bacteria . So, the drug resistance genes can be naturally introduced into the genome of S. typhimurium. The hisG428 gene is inserted into the ampicillin resistance gene. It was also reported that S. typhimurium LT2 strains are inherently non-colicinogenic, but the strain was shown to have an ability to receive colicin plasmids from E. coli through conjugation [17, 25, 26]. Thus S. typhimurium has a possibility to have the plasmid pMB1 as well as toxin colicin naturally in their cells even without introducing pAQ1. Therefore, the introduction of pAQ1 into the Ames tester strains does not disturb the biological diversity of S. typhimurium, and pAQ1 plasmid can be generated via self-cloning technology and transferred to S. typhimurium LT2.
In Japan, the Cartagena Domestic Law regulates living organisms resulting from modern biotechnology including recombinant DNA technology, and probable exemptions for microorganisms obtained by self-cloning and/or “natural occurrence” are assessed and decided case by case (for each produced organism) [27, 28]. Based on the following stated reasons, we conclude that all the Ames tester strains recommended for use in the bacterial mutation test  can be certified as non-GMOs;
Genetic backgrounds of the nine strains recommended for use in the bacterial mutation test  can be generated spontaneously, or by radiation or chemicals.
pKM101 harbored in the tester strains TA97, TA97a, TA98, TA100, TA102, and WP2uvrA/pKM101 is a naturally occurring plasmid and self-transmittable.
pAQ1 plasmid which the strain TA102 carries, can be generated via self-cloning technology and transferred to S. typhimurium LT2 by conjugation.
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The authors are grateful to the members of JEMS (The Japanese Environmental Mutagen Society)/BMS (The Bacterial Mutagenicity Study Group) for their valuable comments and helpful discussion on these contents.
The authors declare that they have no competing interests.
KS drafted the manuscript. MY, AH, and TA critically reviewed on the manuscript. All authors read and approved the final manuscript.
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Sugiyama, Ki., Yamada, M., Awogi, T. et al. The strains recommended for use in the bacterial reverse mutation test (OECD guideline 471) can be certified as non-genetically modified organisms. Genes and Environ 38, 2 (2016). https://doi.org/10.1186/s41021-016-0030-3
- Bacterial reverse mutation test
- Genetically modified organisms
- Natural occurrence