Copper-mediated DNA damage caused by purpurin, a natural anthraquinone
Genes and Environment volume 44, Article number: 15 (2022)
Purpurin (1,2,4-trihydroxy-9,10-anthraquinone), a natural red anthraquinone pigment, has historically been used as a textile dye. However, purpurin induced urinary bladder tumors in rats, and displayed a mutagenic activity in assay using bacteria and mammalian cells. Many carcinogenic dyes are known to induce bladder cancers via DNA adduct formation, but carcinogenic mechanisms of purpurin remain unknown. In this study, to clarify the mechanism underlying carcinogenicity of purpurin, copper-mediated DNA damage induced by purpurin was examined using 32P-labeled DNA fragments of human genes relevant to cancer. Furthermore, we also measured 8-oxo-7,8-dihydro-2′-deoxyguanosine (8-oxodG), an indicator of oxidative DNA damage, in calf thymus DNA.
Purpurin plus Cu(II) cleaved 32P-labeled DNA fragments only under piperidine treatment, indicating that purpurin caused base modification, but not breakage of the DNA backbone. In the absence of Cu(II), purpurin did not induce DNA cleavage even with piperidine treatment. Purpurin plus Cu(II) caused piperidine-labile sites predominantly at G and some T residues. Bathocuproine, a Cu(I) chelator, completely prevented the occurrence of piperidine-labile sites, indicating a critical role of Cu(I) in piperidine-labile sites induced by purpurin plus Cu(II). On the other hand, methional, a scavenger of a variety of reactive oxygen species (ROS) and catalase showed limited inhibitory effects on the induction of piperidine-labile sites, suggesting that ROS could not be major mediators of the purpurin-induced DNA damage. Considering reported DNA adduct formation by quinone metabolites of several carcinogenic agents, quinone form of purpurin, which is possibly generated via purpurin autoxidation accompanied by Cu(I)/Cu(II) redox cycle, might lead to DNA adducts and piperidine-labile sites. In addition, we measured contents of 8-oxodG. Purpurin moderately but significantly increased 8-oxodG in calf thymus DNA in the presence of Cu(II). The 8-oxodG formation was inhibited by catalase, methional and bathocuproine, suggesting that Cu(I)-hydroperoxide, which was generated via Cu(I) and H2O2, caused oxidative DNA base damage.
We demonstrated that purpurin induces DNA base damage possibly mediated by Cu(I)/Cu(II) redox cycle both with and without ROS generation, which are likely to play an important role in its carcinogenicity.
Anthraquinones are a class of organic compounds abundant in the universe of natural substances and are found in various plant parts such as roots, rhizomes, fruits, and flowers . Purpurin (1,2,4-trihydroxy-9,10-anthraquinone) is a natural red anthraquinone pigment mostly isolated from madder root (Rubia tinctorum) . Historically, purpurin has been used not only as a textile dye but also as an ingredient of herbal medicine and a food coloring agent. Purpurin has been reported to show beneficial biological activities such as antioxidant, antimutagenic, antimicrobial, neuroprotective, antiadipogenic, and anticancer activities .
On the other hand, purpurin was reported to induce marked hyperplasia of pelvic epithelium and urinary bladder tumors (papilloma and carcinoma) in rats . Purpurin had also a mutagenic activity in Salmonella without mammalian microsomal activation [4, 5] and was active in various mutagenesis assay systems using mammalian cells including V79-HGPRT assay, DNA-repair assay in primary rat hepatocytes, and transformation of C3H/M2 mouse fibroblasts . Working exposed to dyes has been identified as one of the major risk factors for occupational bladder cancer [6, 7]. Many carcinogenic dyes induce carcinogenesis via DNA adduct formation, but carcinogenic mechanisms of purpurin remain unknown.
In this study, to clarify the mechanism underlying the carcinogenicity of purpurin, we investigated purpurin-induced DNA damage in the presence of copper ions. We analyzed DNA damage using 32P-5′-end-labeled DNA fragments obtained from the c-Ha-ras-1 protooncogene and the p16 tumor suppressor gene. We also measured the contents of 8-oxo-7,8-dihydro-2′-deoxyguanosine (8-oxodG), a relevant indicator of oxidative DNA damage, in calf thymus DNA using a high performance liquid chromatograph equipped with an electrochemical detector (HPLC-ECD).
Materials and methods
EcoRI, AvaI, PstI and T4 polynucleotide kinase were purchased from New England Biolabs Ltd. (Ipswich, MA, USA). BssHII was purchased from Takara Bio Inc. (Shiga, Japan). [γ-32P] ATP (222 TBq/mmol) was purchased from Perkin Elmer, Inc. (Waltham, MA, USA). Purpurin, catalase (30,000 units/mg from bovine liver) and 3-(methylthio) propionaldehyde (methional) were purchased from Sigma-Aldrich Co., LLC. (St Louis, MO, USA). Copper chloride dihydrate (CuCl2·2H2O), ethanol, mannitol and sodium formate were purchased from Nacalai Tesque (Kyoto, Japan). Diethylenetriamine-N,N,N′,N″,N″-pentaacetic acid (DTPA) and bathocuproine disulfonic acid were purchased from Dojindo Laboratories (Kumamoto, Japan). Nuclease P1 (500 units/vial) and piperidine were purchased from FUJIFILM Wako Pure Chemical Co., Ltd. (Osaka, Japan). Calf intestinal phosphatase (500 units/vial) was purchased from Roche Diagnostics GmbH (Mannheim, Germany).
Preparation of 32P-5′-end-labeled DNA fragments
DNA fragments were obtained from the human p16 tumor suppressor gene  and the c-Ha-ras-1 protooncogene . A fragment containing exon 2 of the human p16 tumor suppressor gene was obtained as described previously . The 5′ end-labeled 460-base pair fragment (EcoRI* 9481-EcoRI* 9940) containing exon 2 was also further digested with BssHII to obtain the singly labeled 309-base pair fragment (EcoRI* 9481-BssHII 9789) and the 147-base pair fragment (BssHII 9794-EcoRI* 9940). DNA fragments were also prepared from plasmid pbcNI, which carries a 6.6-kb BamHI chromosomal DNA segment containing the human c-Ha-ras-1 protooncogene. The singly labeled 98-base pair fragment (AvaI* 2247-PstI 2344) and 337-base pair fragment (PstI 2345-AvaI* 2681) were obtained as previously described . For reference, nucleotide numbering starts with the BamHI site . An asterisk indicates 32P-labeling.
Detection of damage to isolated 32P-labeled DNA fragments
Reaction mixtures containing 32P-labeled DNA fragment, 20 μM/base calf thymus DNA, purpurin and 20 μM CuCl2 in 200 μl of sodium phosphate buffer (pH 7.8) containing 5 μM DTPA were incubated for 1 h at 37 °C under light shielding. To examine the effects of reactive oxygen species (ROS) scavengers and bathocuproine, these reagents were added before the addition of purpurin. The DNA fragments were heated in 1 M piperidine for 20 min at 90 °C, followed by electrophoresis on an 8% polyacrylamide/8 M urea gel as previously described . An autoradiogram was obtained by exposing an X-ray film (FUJIFILM Corp., Tokyo, Japan) to the gel. Band intensity was quantified using ImageJ software (National Institutes of Health).
The preferred cleavage sites were determined by directly comparing the positions of the oligonucleotides with those produced by the chemical reactions of the Maxam-Gilbert procedure , using a DNA-sequencing system (LKB 2010 Macrophor, LKB Pharmacia Biotechnology Inc., Uppsala, Sweden). The autoradiogram was obtained by exposing an imaging plate (BAS-MS2040, FUJIFILM Corp.) to the gel. The relative amounts of oligonucleotides from the treated DNA fragments were measured using a laser scanner (Typhoon FLA-9500, GE Healthcare, Buckinghamshire, England) and analyzed with ImageQuant TL software (GE Healthcare).
Analysis of 8-oxodG formation in calf thymus DNA
Measurement of 8-oxodG in calf thymus DNA was performed as described previously . The reaction mixtures, containing 100 μM/base calf thymus DNA, purpurin and 20 μM CuCl2 in 400 μl of 4 mM sodium phosphate buffer (pH 7.8) containing 5 μM DTPA, were incubated for 1 h at 37 °C under light shielding. To examine the effects of ROS scavengers and bathocuproine, these reagents were added before the addition of purpurin. After ethanol precipitation, the DNA was digested into nucleosides with nuclease P1 and calf intestine phosphatase. The amount of 8-oxodG was measured using an HPLC-ECD as described previously .
Results were presented as means ± standard deviation (SD). Differences were analyzed by student t-test. P values less than 0.05 were considered to be statistically significant.
Damage of 32P-labeled DNA fragments by purpurin in the presence of Cu(II)
Figure 1 shows the autoradiogram of DNA fragments incubated with purpurin plus Cu(II) and followed by treatment with or without piperidine. Oligonucleotides were detected on the autoradiogram as a result of the DNA cleavage. In the presence of Cu(II), purpurin caused DNA cleavage with piperidine treatment, although no or little DNA cleavage was observed without piperidine treatment (Fig. 1 and Fig. S1A). Meanwhile, in the absence of Cu(II), purpurin did not induce DNA cleavage even with piperidine treatment (data not shown). DNA cleavage induced by purpurin plus Cu(II) was detected at 5 μM of purpurin, and the degree of the DNA cleavage was increased at 10, 20, 50 and 100 μM. As piperidine cleaves DNA at sugars with modified bases, it is reasonable to conclude that purpurin caused base modification but not breakage of deoxyribose phosphate backbone in the presence of Cu(II).
Effects of scavengers and bathocuproine on DNA damage induced by purpurin in the presence of Cu(II)
Effects of the scavengers and bathocuproine on the damage of 32P-labeled DNA fragments by purpurin plus Cu(II) were examined. Bathocuproine, a Cu(I)-specific chelator , prevented purpurin-induced DNA damage in 32P-labeled DNA fragments in the presence of Cu(II) (Fig. 2 and Fig. S1B). Furthermore, methional, a scavenger of a variety of ROS , partially inhibited the DNA damage. Catalase also showed a slight inhibitory effect on the DNA damage. On the other hand, the DNA damage was not prevented by typical free hydroxyl radical (•OH) scavengers such as ethanol, mannitol and sodium formate. These results suggest that ROS could not be major mediators of the purpurin-induced DNA damage.
Site specificity of DNA damage by purpurin in the presence of Cu(II)
The patterns of DNA damage induced by purpurin in the presence of Cu(II) were determined by DNA sequencing using the Maxam-Gilbert procedure . The relative intensity of DNA damage obtained by scanning autoradiogram with a laser scanner is shown in Fig. 3. Purpurin cleaved DNA frequently at guanine (G) and at some thymine (T) residues in DNA fragments obtained from the human c-Ha-ras-1 protooncogene with piperidine treatment (Fig. 3A). In DNA fragments obtained from the p16 tumor suppressor genes, DNA cleavages at T as well as G residues were induced by purpurin under piperidine treatment (Fig. 3B). Thus, purpurin caused piperidine-labile sites predominantly at G and some T residues.
Formation of 8-oxodG in calf thymus DNA by purpurin in the presence of Cu(II)
To investigate oxidative DNA damage, we measured the contents of 8-oxodG, an indicator of oxidative base damage, in calf thymus DNA treated with purpurin in the presence of Cu(II). The formation of 8-oxodG was significantly increased by purpurin treatment in a concentration-dependent manner (Fig. 4A). Figure 4B shows the effects of ROS scavengers and bathocuproine on the Cu(II)-mediated 8-oxodG formation induced by purpurin. Catalase and methional significantly inhibited the 8-oxodG formation, while typical •OH scavengers such as ethanol, mannitol and sodium formate did not. Bathocuproine showed an inhibitory effect on the 8-oxodG formation. These results suggest the involvement of H2O2, ROS other than •OH and Cu(I) in the 8-oxodG formation caused by purpurin plus Cu(II).
The present study demonstrated that purpurin caused copper-mediated DNA damage in 32P-labeled DNA fragments. Cleaved oligonucleotides were observed only under piperidine treatment, indicating that purpurin caused base modification, but not breakage of the deoxyribose-phosphate backbone, in the presence of Cu(II). Bathocuproine completely prevented the piperidine-labile sites induced by purpurin plus Cu(II), while methional and catalase also displayed limited inhibitory effects on the DNA damage (Fig. 2). Site specificity of the purpurin-induced piperidine-labile sites (predominantly at G) is inconsistent with our previous studies indicating that many ROS-generating agents plus Cu(II) frequently cleaved DNA at cytosine (C) and T under piperidine treatment [17,18,19]. These results suggest that mechanisms other than ROS generation could mainly contribute to purpurin-induced DNA damage. Some DNA adducts formed in DNA base has been reported to lead to DNA strand break under piperidine treatment [20,21,22]. Many quinones are reported to form DNA adduct through covalently binding to nucleobases of DNA . Notably, o-quinone metabolites of carcinogens such as estrogen and bisphenol A contribute to their carcinogenic mechanism via DNA adduct formation [24, 25]. Thus, we considered that the o-quinone form of purpurin, which is generated via purpurin autoxidation accompanied by Cu(I)/Cu(II) redox cycle, could lead to DNA adducts and piperidine-labile sites (Fig. 5). Although a recent study has reported that purpurin can react with Cu(II) generating a metal complex (2:1) under certain conditions , the complex was not detected by ultraviolet-visible spectroscopy under our conditions (data not shown).
Interestingly, the present study indicated that purpurin plus Cu(II) also induced oxidative damage. We examined the ability of purpurin to induce 8-oxodG formation. 8-OxodG causes DNA misreplication resulting in mutation or cancer [27, 28] and is one of the oxidative DNA products generated by the reaction with ROS . Purpurin modestly but significantly increased formation of 8-oxodG in calf thymus DNA in the presence of Cu(II). To clarify the mechanism of purpurin-induced 8-oxodG formation, we investigated effects of ROS scavengers and bathocuproine. Catalase and bathocuproine exhibited inhibitory effects on the increase of 8-oxodG, although not complete. Methional also showed similar results, while •OH scavengers did not inhibit the 8-oxodG formation. These results suggest that Cu(I)/Cu(II) redox cycle and concomitant H2O2 production possibly via autoxidation of purpurin lead to generate Cu(I)-hydroperoxide, which induces oxidative DNA base damage including 8-oxodG formation (Fig. 5).
A higher level of serum copper was observed in bladder cancer patients than in healthy controls . A recent case-controlled clinical study reported that plasma level of copper was significantly and positively associated with bladder cancer development, suggesting that the increase in plasma copper may be one of the risk factors for bladder cancer . Many studies have reported that copper plays a role in promoting carcinogenesis though inducing oxidative stress and resultant DNA damage [32,33,34]. Copper ions have been known to be particularly adept at helping other agents to damage DNA and to enhance mutagenic activities via production of ROS [35, 36]. Our previous studies also demonstrated that copper mediated the various carcinogens-induced ROS production and oxidative DNA damage [19, 37, 38]. However, the present study suggests that purpurin plus Cu(II) leads to DNA damage through not only ROS generation but also possible DNA adduct formation mediated by Cu(I)/Cu(II) redox cycle (Fig. 5). Therefore, both oxidative DNA damage and DNA adduct could be involved in the carcinogenic mechanism of purpurin.
Several previous studies reported that purpurin is also capable of binding DNA based on voltammetric, electrochemical and spectroscopic analysis [39,40,41]. These findings suggest that purpurin, copper and DNA might coexist and interact with each other and lead to DNA damage via ROS generation and DNA adduct formation. Future research should focus on the association between copper and purpurin for understanding of mechanism of purpurin carcinogenicity.
We demonstrated that purpurin plus Cu(II) induces Cu(I)/Cu(II) redox cycle-mediated DNA base damage, possibly through both ROS-independent and -dependent mechanisms, which are likely to contribute to its carcinogenicity.
Availability of data and materials
Data sharing is not applicable to this article as no datasets were generated or analyzed during the current study.
A high performance liquid chromatograph equipped with an electrochemical detector
Reactive oxygen species
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This work was supported by Japan Society for the Promotion of Science (JSPS) KAKENHI Grant Numbers 19H03885, 18 K19673.
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Kobayashi, H., Mori, Y., Iwasa, R. et al. Copper-mediated DNA damage caused by purpurin, a natural anthraquinone. Genes and Environ 44, 15 (2022). https://doi.org/10.1186/s41021-022-00245-2
- DNA damage
- Reactive oxygen species